PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.3VW4U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 793aa    MW: 89915.5 Da    PI: 8.5603
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.3VW4UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.62.3e-19278369191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fYn+Y+    F +rk+   +  ++g+i++r++vC+keg r+ +  + ++++r+ r+ trt+C a+l++k+++  g+w+v+ +++ HnH+l+p
  Aradu.3VW4U 278 QFYNAYSCWHRFVMRKHGVVRD-NQGRIISRQLVCNKEGWRNMRYLDmDDRSREARSLTRTKCPARLRIKLDYgCGRWKVSCFVESHNHDLTP 369
                  6**************9999887.8888***************9998867889999******************99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-16278369IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.052503539IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-5514541IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.102.9E-5580588IPR001878Zinc finger, CCHC-type
SuperFamilySSF577562.09E-6641673IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.9E-5650670IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.614655670IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MEATKPTGKR YSRLTSTWDG GIIVWHCVGR SQGWDSRLAG RNIYDVIGCM CGTDTGIATP  60
PAVEAMPGAI AAIELTPGGE VRCLRWHRPE GREGGRHEGR SSEDLRHHVG EGGMALLQRQ  120
QGWWGGVESR GYNGRGGGIR HGNEEKNKIK IVRPGYVNYV WNSVIMVGPA TVGVPTETLC  180
VGLGKGHLPP TPTVQFLSVE AQPLVLIKED DVNNDSDNDL GVDFDYQPNA EDDADDDDVD  240
SLDSTSKSEE VCGVKRIADL MVEDIWNLEF RTEDEACQFY NAYSCWHRFV MRKHGVVRDN  300
QGRIISRQLV CNKEGWRNMR YLDMDDRSRE ARSLTRTKCP ARLRIKLDYG CGRWKVSCFV  360
ESHNHDLTPP QFAHLIPANR RLTVTDRVQV ENLHNFGINS LIRFYVNRKN TLIDFMHNLD  420
RALKEYRNKE LIADFKSQCS EPVMITSLEV YERSASCYFM RNVFKEIRNE IQRAGALNIT  480
VLSTTLDKVE FSVTALGDPA KDRRVEVDRG KNLFSCSCKL FESRGIPCSH IFCAMKFENI  540
LEFPDSLIYK RWTKNAKNEF ISTDMPVNDD IERVLKFQVG ALASNCNKLC DIACKDLADF  600
DEVQSELVNL VIRLQSRKQG KSTPNVNVEG SNDPFVVKSK GAPSKRSSWR KKRACSNCHK  660
YGHYYKRCPD LMQHSVEGNP RDRSYGNASA KDSGFSPERF ANSSRSFSIK SEHHSRPNTK  720
PFKKGGTRKF TATGMRNRKG KDNTFVERSL HESSESIDIA STNGVFNKNL YSLTQQVKES  780
QQDKIHSFTN YMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.3VW4U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016199886.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025652835.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445BU030.0A0A445BU03_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-18FAR1-related sequence 5