PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.4097C

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 422aa MW: 48295.7 Da PI: 9.0875

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.4097C	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.7	1.4e-16	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++k+ ++i+++ +C++egk +++ ++ +++++++ +C a++ ++ k g ++k++l+H+H+ +p Aradu.4097C 51 KFYKDYAKAAGFSTRVRSTNKK--GNKIKNQLITCNREGKWKSKISS---TEKKNPTAGLNCAARIYIHTLKdVGASIISKVVLHHSHPYCP 137 6**************98887..77799*********99888...8889999*******9988799***********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-13	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.976	263	299	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0062	274	301	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MDDSTSDYQL NQGEVDFEFA SNEVSEALSV VDDQFVPKVG MTFKTLEDAA KFYKDYAKAA 60 GFSTRVRSTN KKGNKIKNQL ITCNREGKWK SKISSTEKKN PTAGLNCAAR IYIHTLKDVG 120 ASIISKVVLH HSHPYCPTQA EMLKQYRELS MSVRRTIENN EEADLYEDRH IWFITRNSSL 180 IQFVKHYDNC LGSKEQAERE SDATDFHTVI PCATKTSIEA QFQDVYTYQK GKANCITRLT 240 NSALGYSVYE VGEQVSTSIF NKFVVTYDSV VAEVKCQCLL FESRGIMCRH TLSVLSFERV 300 SQVSSRYILK RWSKKVKRRH THIKSSHDEP MLELRSKRFD ELVFHLQNIY EFASVSEEVT 360 GILHRAYDNV MVEMESLKAK RKGTSSLSHE DANLKSVNEL QSPPRIQTRG RPKNRLGSKL 420 DK

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MDDSTSDYQL NQGEVDFEFA SNEVSEALSV VDDQFVPKVG MTFKTLEDAA KFYKDYAKAA  60
GFSTRVRSTN KKGNKIKNQL ITCNREGKWK SKISSTEKKN PTAGLNCAAR IYIHTLKDVG  120
ASIISKVVLH HSHPYCPTQA EMLKQYRELS MSVRRTIENN EEADLYEDRH IWFITRNSSL  180
IQFVKHYDNC LGSKEQAERE SDATDFHTVI PCATKTSIEA QFQDVYTYQK GKANCITRLT  240
NSALGYSVYE VGEQVSTSIF NKFVVTYDSV VAEVKCQCLL FESRGIMCRH TLSVLSFERV  300
SQVSSRYILK RWSKKVKRRH THIKSSHDEP MLELRSKRFD ELVFHLQNIY EFASVSEEVT  360
GILHRAYDNV MVEMESLKAK RKGTSSLSHE DANLKSVNEL QSPPRIQTRG RPKNRLGSKL  420
DK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.4097C

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-159	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-20	far-red elongated hypocotyls 3