PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.40QFE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 318aa    MW: 35503.2 Da    PI: 6.6277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.40QFEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05135154120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C+k+F+r  n++ H+
  Aradu.40QFE 135 FSCTVCNKMFNRFNNMQMHM 154
                  89*****************9 PP
2zf-C2H213.80.00017220242123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  + + ++H +++
  Aradu.40QFE 220 FGCRKCGKPFAVRGDWRTHEKNC 242
                  56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.89E-5128157No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5135154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.889135162IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-5203240No hitNo description
Gene3DG3DSA:3.30.160.607.3E-5206240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQTHHHSFSS YISSCGSSST TSPFLDNPED ADVVLLDDEE ASISLSLGPP GQHHNPKIST  60
TSPLLHHNHY NPNPNCDDDQ SGVTVALHIG LPSTTTTTAP NTTTTISTTT SKTDTLQGQY  120
WIPSPAQILI GPTQFSCTVC NKMFNRFNNM QMHMWGHGSQ YRKGPESLRG AKPASSMLRL  180
PCYCCAEGCK NNIEHPRSRP LKDFRTLQTH YKRKHGAKPF GCRKCGKPFA VRGDWRTHEK  240
NCGKLWFCIC GSDFKHKRSL KDHVRAFGDG HAPHTVESCD QFVDEEEDDY ELDDDDDLDL  300
EDNNNNNSNG NQGVFSFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.40QFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020999771.10.0zinc finger protein WIP6-like
SwissprotQ9FX681e-120ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A445D0320.0A0A445D032_ARAHY; Uncharacterized protein
STRINGXP_007153349.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-114C2H2-like zinc finger protein