PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.42P16
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 148aa    MW: 16246 Da    PI: 10.5444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.42P16genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00181103123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F     L  H+r+H
  Aradu.42P16  81 HSCSICGLEFAVGQALGGHMRKH 103
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.52648IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.36E-82648No hitNo description
PROSITE profilePS501579.3072653IPR007087Zinc finger, C2H2
PfamPF139123.0E-92650IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SuperFamilySSF576673.36E-876103No hitNo description
SMARTSM003550.2881103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.76781103IPR007087Zinc finger, C2H2
PfamPF139126.9E-881104IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVNCLMLLTK VGETKTNNHP LKGGGFKCKT CHRRFLSFQA LGGHRASHKK LKLMMGADLS  60
CQLPSSSSLS SWNMMTKNKM HSCSICGLEF AVGQALGGHM RKHRNGGMVI HDHGAMTKST  120
SDGSVKTRRF NLCLDLNLTP SENDLKLN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.42P16
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952291.11e-105zinc finger protein ZAT12
RefseqXP_025686133.11e-105zinc finger protein ZAT12-like
RefseqXP_029152745.11e-105zinc finger protein ZAT12-like
SwissprotQ681X41e-24ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A445E4H41e-103A0A445E4H4_ARAHY; Uncharacterized protein
STRINGGLYMA11G15140.11e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.18e-29C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]