PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.43J56
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 310aa    MW: 33922.1 Da    PI: 7.4258
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.43J56genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.1e-071556338
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 +r+C+++ + +   fC+ ++ +lC++C    H        H+
  Aradu.43J56 15 PRVCDTCRSAPCAVFCRADSAYLCASCDARVHAAntlasrHE 56
                 579*************************99995556666676 PP
2zf-B_box30.47.9e-1058103342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++ + C+ +   lC +C   +H+       H++vp+
  Aradu.43J56  58 VWVCEACERAPAAFLCKADAASLCSSCDADIHSAnplasrHQRVPI 103
                  689*****************************66999999**9997 PP
3CCT70.73.5e-24241284144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Aradu.43J56 241 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 284
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-101360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2531360IPR000315B-box-type zinc finger
CDDcd000213.76E-81660No hitNo description
PROSITE profilePS5011911.19256103IPR000315B-box-type zinc finger
PfamPF006437.3E-857103IPR000315B-box-type zinc finger
CDDcd000216.92E-859103No hitNo description
SMARTSM003367.3E-1061103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648241283IPR010402CCT domain
PfamPF062035.5E-18241283IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MLDEDTNANT TSWAPRVCDT CRSAPCAVFC RADSAYLCAS CDARVHAANT LASRHERVWV  60
CEACERAPAA FLCKADAASL CSSCDADIHS ANPLASRHQR VPIGPMYGPP SVPVTRTNGE  120
FVGMVDEYLD LVDCNSCGDD DNNHHHSNNN NNHFAVDGVD HRYGYQQQYG GGGGGQKSYG  180
GGITMLLLVK VSVSSMEVGV VPESSISNGS ICHSRPPKGT IDLFSGPTPM QMSSHLTPMD  240
REARVLRYRE KKKTRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDVEAEV DQMFSTPLIT  300
EVGYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.43J56
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139358.11e-125hypothetical protein PHAVU_008G022800g
SwissprotQ965021e-107COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A0S3RRI11e-127A0A0S3RRI1_PHAAN; Uncharacterized protein
STRINGXP_007139358.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.16e-79CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]