PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.44AJR
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 455aa    MW: 52628.7 Da    PI: 7.8288
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.44AJRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.2e-1859145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ ++   +++t+ +   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.44AJR  59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISS---TEKTNLTAGFNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145
                  6***************998776..8889**************99887...89999*************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1559145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.149301337IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-4311334IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4312339IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
KFELVLKIMD HSTSDCQLNP GEVDCEFEFN EFPEPLSVVD DELVPKVGMT FTTLEDAGKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISSTEKTNLT AGFNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE AVCVWVYYAD  180
LYEDRHIWVP IYLDHHFWAG MRSTQRSESM HSFFNMYIAR NSSEQAERES DAADFHTVIP  240
CATKSSIEAQ FQDAYTHAKF REVLAQFRGK ANCITRLKNS ALSYSIYEVG EQVSSSIFNK  300
FAVTYDSIAA EVKCQCLLFE SRGILCRHAL SVLSFEQVSQ VSPRYILERW SKKVKRRYTH  360
INSSHDEPLM EPRSKRFDQL VFRSQNICEF ASESEELTAI LHRAYDNIMA EMESLKAKRK  420
GRSFLSHEDA NLESVNELQS PPRIRTRGRP NWVYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.44AJR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-179protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-26far-red elongated hypocotyls 3