PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.470B5
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 257aa    MW: 28579 Da    PI: 9.7366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.470B5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20118168255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta +Aaka+++a+ kl+g
  Aradu.470B5 118 HYRGVRQRP-WGKYAAEIRDPNKRG--SRVWLGTFDTAIDAAKAYDRAAFKLRG 168
                  8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-31117176No hitNo description
Gene3DG3DSA:3.30.730.109.6E-33117177IPR001471AP2/ERF domain
PfamPF008476.3E-14118168IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23118177IPR016177DNA-binding domain
SMARTSM003804.4E-38118182IPR001471AP2/ERF domain
PROSITE profilePS5103224.052118176IPR001471AP2/ERF domain
PRINTSPR003678.3E-14119130IPR001471AP2/ERF domain
PRINTSPR003678.3E-14158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MANPAELSAL NQIKIHLLGE LSPLPHNSSF SFQFYQTNPT TSSSSSSSSS SSASVNQYFN  60
CNEVVNNLET PRSKPHSSAS SSNRKPSLQI SLPKKTEWIQ FGEEKEISKS SEQQKKKHYR  120
GVRQRPWGKY AAEIRDPNKR GSRVWLGTFD TAIDAAKAYD RAAFKLRGSK AILNFPLEAG  180
ADDRKRPRQE EEVEEKPVVK KEKMEESSDV SGVRDIPLTP SSWTGFWDAD VTGIFSVPPL  240
SPLSPHPALG FPQLMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-31117177161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-31115183270ATERF1
3gcc_A8e-31115183270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.470B5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963627.10.0ethylene-responsive transcription factor 5
SwissprotO803419e-70EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A444WUK71e-140A0A444WUK7_ARAHY; Uncharacterized protein
STRINGGLYMA11G03900.11e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-38ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]