PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.48EM9
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 190aa    MW: 21313.4 Da    PI: 10.5787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.48EM9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
      Aradu.48EM9  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.774161IPR017930Myb domain
SuperFamilySSF466892.32E-15268IPR009057Homeodomain-like
SMARTSM007174.1E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-13456IPR009057Homeodomain-like
PfamPF002491.5E-7555IPR001005SANT/Myb domain
CDDcd116601.14E-17657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLLLPA PKIDNNHMAL STAVRHDENV LETKPLAICG LSLPSHNSKQ  120
QLSRLERKLS ISYKPCKVTA NKTEAYGGYW QNNQGSEKRR YSSSTLLQEG RPRDSPEAEK  180
SHDVNILSKS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.48EM9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025698577.11e-95telomere repeat-binding factor 2
SwissprotQ9FJW53e-39TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A445ET152e-94A0A445ET15_ARAHY; Uncharacterized protein
STRINGGLYMA17G17370.11e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.26e-35MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]