PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.4HX8U

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 279aa MW: 30717.8 Da PI: 6.0768

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.4HX8U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.7e-33	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LHerFv+av+qLGG+ kAtPk+il++m+vkgLtl+h+kSHLQkYRl Aradu.4HX8U 23 PRLRWTTDLHERFVDAVTQLGGATKATPKAILRTMNVKGLTLYHLKSHLQKYRL 76 8****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.192	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-31	20	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-16	23	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	23	77	IPR006447	Myb domain, plants
Pfam	PF00249	4.4E-8	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	4.0E-9	116	161	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MFSRLVHPCG GGGDGDGVEE MMPRLRWTTD LHERFVDAVT QLGGATKATP KAILRTMNVK 60 GLTLYHLKSH LQKYRLGKQS GKDFDEGCKD ASYPLESPST NNSSPKASYD ANEGQEVKEA 120 LRAQMEVQSK LHLLVEAEKH LLICQDAEQT YMVMLERACK MLADQIISNP MVDTGSQRLE 180 GLHVSEVLVP SLILLPQGTE SCLTSLENLG GLTLEGSPSG ARKRILNLDS VVAPLMWNEA 240 NMRTQGIHSS QVNPHHEITG YEYYTSDQDG AGHPCTFVH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.4HX8U

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015941158.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	8e-50	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A445BGV0	1e-180	A0A445BGV0_ARAHY; Uncharacterized protein
STRING	GLYMA20G33540.2	1e-117	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-52	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]