PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.4PC58

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 418aa MW: 47145.7 Da PI: 8.7452

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.4PC58	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	363	382	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ + +H++++ Aradu.4PC58 363 CSLCGKPF-KPEKMYKHMKSC 382 ******.*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	3.6E-39	11	248	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MEAKGEVRRL HIIYFLSNIG GRPDHPHLIR VLHLARNGVY LRDVKMWLGE LRGKDLPEAF 60 SWSYKRRYKS GYVWQDLLDD DLITPISDNE YVLKGSQIHP TPFENFSPDG KTKSPQVHVT 120 EGKQQPSLIE EESRIIGRDR ESKMDTPTKV SSEISQDSLV FSSERSSVTT DGYESCKAEE 180 EKEKPSVRSN KECSIEKEHE KPENCALPSL YHKLLSKSIG NKEEQNKTDT PDSSFSTSSS 240 SSSQSSFSKL RNSSNRVSMA FRNWISCGTV DTNDAALIRM GDAKKIDSNE SMTNLPENKA 300 QICKGDKFGG SARCFRISWN NDQQENQHGA RKSFDGEETN RSRRKLGDFL NQTHHKPLGE 360 PICSLCGKPF KPEKMYKHMK SCKGIKALGT STATAALADK TQLHRSSTSN HTNYLLTN

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MEAKGEVRRL HIIYFLSNIG GRPDHPHLIR VLHLARNGVY LRDVKMWLGE LRGKDLPEAF  60
SWSYKRRYKS GYVWQDLLDD DLITPISDNE YVLKGSQIHP TPFENFSPDG KTKSPQVHVT  120
EGKQQPSLIE EESRIIGRDR ESKMDTPTKV SSEISQDSLV FSSERSSVTT DGYESCKAEE  180
EKEKPSVRSN KECSIEKEHE KPENCALPSL YHKLLSKSIG NKEEQNKTDT PDSSFSTSSS  240
SSSQSSFSKL RNSSNRVSMA FRNWISCGTV DTNDAALIRM GDAKKIDSNE SMTNLPENKA  300
QICKGDKFGG SARCFRISWN NDQQENQHGA RKSFDGEETN RSRRKLGDFL NQTHHKPLGE  360
PICSLCGKPF KPEKMYKHMK SCKGIKALGT STATAALADK TQLHRSSTSN HTNYLLTN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.4PC58

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015932561.1	0.0	uncharacterized protein LOC107458866
TrEMBL	A0A444Y1B5	0.0	A0A444Y1B5_ARAHY; Uncharacterized protein
STRING	GLYMA08G16910.2	1e-174	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20