PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.4R4UF

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 543aa MW: 62133.4 Da PI: 8.8608

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.4R4UF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.5	2.2e-18	67	153	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.4R4UF 67 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIQTLKdVGAWIISKVVLDHSHPCCP 153 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-16	67	153	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MDDSTSDCQL NPGEVGDEFE SNEVPEVYYI RHDWFLTWCI LQPLSVVDDQ LVPKVGMTFT 60 TLEDAGKFYR NYAKAAGFST RVRSTNRKGN EIKNQLITCS REGKWKSKIS PTEKTNPTAG 120 LNCPARIYIQ TLKDVGAWII SKVVLDHSHP CCPSKVEMLK QHRELSMSIH RKIENNEEAD 180 LYEDRHIWVP IYLDHHFWAG MRSTQRSESM HSFFNKFITR NSSLIQFIKQ YDNCLGSREQ 240 AERELDVADF HTVIPCATKS TIEAQFQDAE VQAQFRGKAN CITRLTNSAL GYSVYEVGEQ 300 VSSSIFNKFV VTYDSVAAKI KCQCLLFESR GIMCRYALSV LSFEQVSQVS PRYILERWSK 360 KVKRRHTHIK SSHDEPLLEP RSKRFDQLVF RSQNICEFAS ESEELTAILH RAYDNVMAEM 420 ESLKAKRKGT YSLSHKDANL ESVNELQSPP RIRTRGRPKN RLGSKLDKQI ANATKKKKMK 480 VLSEINLFDA ASAVHSNSSQ YQGHVMNYQF RVPAAGDNSL GGFSLKASWG DRFQGHLFNL 540 QTS

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MDDSTSDCQL NPGEVGDEFE SNEVPEVYYI RHDWFLTWCI LQPLSVVDDQ LVPKVGMTFT  60
TLEDAGKFYR NYAKAAGFST RVRSTNRKGN EIKNQLITCS REGKWKSKIS PTEKTNPTAG  120
LNCPARIYIQ TLKDVGAWII SKVVLDHSHP CCPSKVEMLK QHRELSMSIH RKIENNEEAD  180
LYEDRHIWVP IYLDHHFWAG MRSTQRSESM HSFFNKFITR NSSLIQFIKQ YDNCLGSREQ  240
AERELDVADF HTVIPCATKS TIEAQFQDAE VQAQFRGKAN CITRLTNSAL GYSVYEVGEQ  300
VSSSIFNKFV VTYDSVAAKI KCQCLLFESR GIMCRYALSV LSFEQVSQVS PRYILERWSK  360
KVKRRHTHIK SSHDEPLLEP RSKRFDQLVF RSQNICEFAS ESEELTAILH RAYDNVMAEM  420
ESLKAKRKGT YSLSHKDANL ESVNELQSPP RIRTRGRPKN RLGSKLDKQI ANATKKKKMK  480
VLSEINLFDA ASAVHSNSSQ YQGHVMNYQF RVPAAGDNSL GGFSLKASWG DRFQGHLFNL  540
QTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.4R4UF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444X817	0.0	A0A444X817_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-28	far-red elongated hypocotyls 3