PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.4S1TT
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 397aa    MW: 42978 Da    PI: 8.922
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.4S1TTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.31.8e-14129167241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C N+ +
  Aradu.4S1TT 129 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCYNNVD 167
                  89**************************.********986 PP
2TCR51.61.8e-16213252140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Aradu.4S1TT 213 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 252
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.0E-16128168IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.676129253IPR005172CRC domain
PfamPF036382.5E-11130165IPR005172CRC domain
SMARTSM011148.4E-20213254IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.9E-13216251IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGEGEGGDCA LRNVASDAPT VPVPVPPSDI PAKKLARQLD FTGLAGMPGG APFPEHSQLR  60
QQQQQQLQPQ VVAQSQSRSH PQTMTQPMLM MPMPHPPQAP RLSTRVGKSE SPKPRSRTNF  120
ETKEATPKKQ KQCNCKHSKC LKLYCECFAS GIYCDGCNCV NCYNNVDNEA ARREAVGATL  180
ERNPNAFRPK IASSPHGPHD NREDAGEVVI LGKHNKGCHC KKSGCLKKYC ECFQANILCS  240
ENCKCMDCKN FEGSEERQAL FHGDQNINMT YIQQAANAAI TGAVGSSGFS SPPVSKKRKG  300
QELSFVPTAK DPSIGKLGKQ ANHVKGPLPS SSFSPAPSTH VGPATLGPSK FIYRSVLADI  360
LQPEHLKELC SVLVLLSGQA AKTVTGKLSF KSRYEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-321212622132Protein lin-54 homolog
5fd3_B1e-321212622132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.4S1TT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025688328.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_025688329.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-138TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445A2X80.0A0A445A2X8_ARAHY; Uncharacterized protein
STRINGXP_007152845.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-106Tesmin/TSO1-like CXC domain-containing protein