PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.4Y1CB
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 295aa    MW: 34288.5 Da    PI: 6.9416
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.4Y1CBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.1e-16181265185
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                  f+ v+  s+ +  +++ +p +fa+++++  e++    l+ e+gr W+v ++ + ++g     y l+kGW +F + n+L+  D++vF+l 
  Aradu.4Y1CB 181 FEVVMRDSYINGGRCMAIPSNFARKYMK--EGG--YLLRVEDGRAWKVMFKTWSGDGVpykkYKLQKGWAKFSQGNKLQKDDVCVFELL 265
                  677888888888899***********84..466..5666677********998888878888*************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-1411109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.34615110IPR003340B3 DNA binding domain
CDDcd100171.25E-915108No hitNo description
Gene3DG3DSA:2.40.330.102.4E-1215109IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.008216110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-19174286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-18175267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-17179286No hitNo description
SMARTSM010190.0015181273IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026181288IPR003340B3 DNA binding domain
PfamPF023621.5E-14181268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAFNQQGEPT NSVVSFFKII CRWHIRDEKI KLPTEFTNKC GLKLPNPVIL KVVNGNQKKV  60
HWTNINGSIW FIGKEWKEFL EHYSVSHGHL LLFKYCPDAS YFRVQIFDNT TLEIDYPSPE  120
LNYADYDDDD FDFDDDGDGD GDDDVMKVHY DQYQFKEKNK SIADAIKSRD RQERQDGNPN  180
FEVVMRDSYI NGGRCMAIPS NFARKYMKEG GYLLRVEDGR AWKVMFKTWS GDGVPYKKYK  240
LQKGWAKFSQ GNKLQKDDVC VFELLYNNNS NGSSTTIPTF NVLIHRNHIG SSYSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.4Y1CB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025683122.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A444Z4V11e-155A0A444Z4V1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1909224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-16B3 family protein