PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.4Y23Y
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 296aa    MW: 33849.6 Da    PI: 9.8884
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.4Y23YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.23.7e-25138229191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fY++Y++  GF +r+ k+ ++ +ng i+++t+ C++eg+r+++  + + ++r+++++tr+gC a++++k++   gkw+v++++ +HnHel p
  Aradu.4Y23Y 138 RFYEQYSRGKGFAMRVGKKLRN-KNGDIVRYTYLCNREGFRQKKWVElEGRKREHKVVTRCGCMAEMHIKQNGqMGKWYVSRFVDDHNHELLP 229
                  5*****************9999.7777****************9888678889999***************9989***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-23138229IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAEIEWREGF GLESFVGRRH RPAAGSHVNH RSHINPTVPS RVEVRHRRRS VRSSHLLEGA  60
LTVFTVPLSA PPCAVTVSSV RASLPCETSL DIGMDEAAFG IKYLDGDGDL GNNVRDSGLT  120
RPEEVMEMLF NSPDEAARFY EQYSRGKGFA MRVGKKLRNK NGDIVRYTYL CNREGFRQKK  180
WVELEGRKRE HKVVTRCGCM AEMHIKQNGQ MGKWYVSRFV DDHNHELLPP KLVEYLPPHR  240
KMSDVDVAHM DSLRQVGISV PKIYESLAAQ AGGFDHIPFT KRDMYNEVRR QRGMRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.4Y23Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020985758.11e-153protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445EHC21e-143A0A445EHC2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9185237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-23FAR1-related sequence 5