PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.545W2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 281aa    MW: 32869.7 Da    PI: 5.032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.545W2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-121461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G  +W+ +++  g+ R++k+c++rw +yl
      Aradu.545W2 14 RGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding569.2e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w++
      Aradu.545W2  67 RGGFTEMEEDQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.034961IPR017930Myb domain
SuperFamilySSF466895.24E-2811108IPR009057Homeodomain-like
SMARTSM007179.3E-61363IPR001005SANT/Myb domain
PfamPF002493.5E-101461IPR001005SANT/Myb domain
CDDcd001674.59E-41661No hitNo description
PROSITE profilePS5129425.12562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007179.7E-1766114IPR001005SANT/Myb domain
PfamPF002495.1E-1667110IPR001005SANT/Myb domain
CDDcd001673.87E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRQPCCEKV GLKRGPWTIE EDHKLMNFIL NNGILCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEMEEDQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
LDPVTHKQIE QKEQTDDDED KNNNTNLQTT ISQKPQENAE EEIKSMEEET KREEKKVNCW  180
DDDNPEILND FDMMCSKFDL ESWMVKQEIN NNNTSTTTTS SHCSSSSLSI DDNNYSSHFS  240
KGESKNDHDD QDNLLQQWIE SMDSILSWDG FNAIDQDLFL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.545W2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150444e-39AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015971352.10.0myb-related protein 315
TrEMBLA0A445CUD01e-175A0A445CUD0_ARAHY; Uncharacterized protein
STRINGGLYMA16G06900.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-81myb domain protein 40