PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.546FD
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 185aa    MW: 20592.9 Da    PI: 8.8134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.546FDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-203685255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++ a++k++g
  Aradu.546FD 36 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDSAALKFKG 85
                 7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-333594IPR001471AP2/ERF domain
CDDcd000186.71E-223694No hitNo description
PfamPF008471.2E-133685IPR001471AP2/ERF domain
PROSITE profilePS5103225.083693IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-223694IPR016177DNA-binding domain
SMARTSM003802.5E-373699IPR001471AP2/ERF domain
PRINTSPR003678.6E-123748IPR001471AP2/ERF domain
PRINTSPR003678.6E-125975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
PPSQSEIQQQ EEEEPSPNLQ IVQLQDQGKK DVRKRHYRGV RQRPWGKWAA EIRDPKKAAR  60
VWLGTFDTAE AAAAAYDSAA LKFKGNKAKL NFPERVAASN SASTTYHHSS QPPPTMVYRP  120
SSQPYTPLMP PPTSSSTSEE GGFPNLMQYA QLLWSRDDDD LQRLSSSSTT SDSAVVMTGQ  180
LHSMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-263596466ATERF1
3gcc_A6e-263596466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.546FD
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981543.11e-106ethylene-responsive transcription factor ERF113
SwissprotQ9FH544e-41EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A444YS108e-98A0A444YS10_ARAHY; Uncharacterized protein
STRINGGLYMA19G27790.21e-44(Glycine max)
STRINGXP_007151718.14e-45(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]