PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.56M1W

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 277aa MW: 31455.1 Da PI: 8.9246

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.56M1W	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.6	8.6e-18	59	145	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k+ l+H+H+++p Aradu.56M1W 59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTVGLNCPARIYIHTLKdVGAWIISKVMLDHSHPCCP 145 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-15	59	145	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.852	187	223	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
KFELVLKIMD PSSSDSALNP GDVDYEFESN EVPEPLSVVD DELVPKVGMT FRTLEDAGKF 60 YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT VGLNCPARIY 120 IHTLKDVGAW IISKVMLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNDE AVYEVGEQVS 180 SSILDKFAVT YDSVAAEVKC QCLLLESRGI LCRHALSVLS FEQVSQVSPR YILERWSKKV 240 KRQHTHQEQP RRATNGAKKQ EVRPIGFSFA KYLRICL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.56M1W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-175	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020992539.1	1e-124	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444Y6C3	1e-153	A0A444Y6C3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-12	far-red elongated hypocotyls 3