PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.56PCA
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 213aa    MW: 24034.4 Da    PI: 4.8205
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.56PCAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.88.3e-19116205291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                   Y+e+A + GF v+k    +   +g  ++r+  C ++g+r++++ +  e+ r++r e+rt+Ckaklk+  +  d++w+v k+  eHnH++ap
  Aradu.56PCA 116 AYKEFAWTRGFGVCKGDVGRV--DGVLVRRDIFCHRQGTRSDKHYDrPERVREERLESRTDCKAKLKIYYDVhDNVWRVRKIIDEHNHDMAP 205
                  59**************99998..9*****************9998856778899***************9999***************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-17116205IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MMNNSSTIPS CNFESDACVI NRTSPIGFNS GKMDFDLYSS DNDEESSEMS LGVCGSSGSS  60
DDDDSTSLFG IGTSHSESNK ESHRSEGDVH GKVPVLLTAE DFLHTVFTSE EEAYNAYKEF  120
AWTRGFGVCK GDVGRVDGVL VRRDIFCHRQ GTRSDKHYDR PERVREERLE SRTDCKAKLK  180
IYYDVHDNVW RVRKIIDEHN HDMAPAEFCN LLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.56PCA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025702836.11e-131protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445D6731e-131A0A445D673_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1719126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-07far-red elongated hypocotyls 3