PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.587RT

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 225aa MW: 26599.7 Da PI: 9.8501

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.587RT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.4	2.6e-14	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y k + Fs++++++++ ++i+++ vCs eg+ +++ + + +t+++ +C a++ v+ +k g w + k++l+H+H+++p Aradu.587RT 11 KFYKHYFKLADFSTKIRNTTRD--RDKIKNQLIVCSSEGRWKSKISP---TLKTNPSAGLNCPARIYVHIMKdVGLWTIFKVVLDHSHPCCP 97 6**************98887..5669********9998776...999**************999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-11	11	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MIFKTLEEAR KFYKHYFKLA DFSTKIRNTT RDRDKIKNQL IVCSSEGRWK SKISPTLKTN 60 PSAGLNCPAR IYVHIMKDVG LWTIFKVVLD HSHPCCPDQA EMFKQHRELS MFMRRTIETH 120 EEAGIRPSKT YQSFVATTGS HRELACNIFS SLDLMSLVWF VELYADRHIW ILVYLDHRFW 180 AGMRSTQKSE SMHSFFNKFI THNSSLRQFV KQYDNFLASI EQAER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.587RT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172294.1	4e-89	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445B8J0	1e-120	A0A445B8J0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-10	far-red elongated hypocotyls 3