PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.58TLG
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 190aa    MW: 21265.4 Da    PI: 7.5801
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.58TLGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.4e-141231784296
                  TS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  42 sgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ++sW+++++   k+ ++++  +GWk+F+ +n+L++gD +vF+l+++se++lv++v
  Aradu.58TLG 123 GSKSWDIQYCGlGKSYNKFFNHRGWKKFAVDNHLEVGDACVFELKESSEEKLVFQV 178
                  469******886777788**************************988999898876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1384182IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-488184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-12119182IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-12123178IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983124184IPR003340B3 DNA binding domain
CDDcd100175.56E-12125182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRRSARYLTL NLFWHVDPSP APVIFNFHFV SCLDLQHKMS TSNSKVNFIA SSSGVVIENI  60
APLKTVSGPT TNLPGDEDIQ PLSGCPFYHV IISKSHIYPA FSMPVSNELA LPSAVVPAIL  120
KYGSKSWDIQ YCGLGKSYNK FFNHRGWKKF AVDNHLEVGD ACVFELKESS EEKLVFQVQI  180
LRGDLPETFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.58TLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960099.11e-109B3 domain-containing protein Os06g0112300-like
RefseqXP_025694982.11e-109B3 domain-containing protein Os06g0112300
RefseqXP_025694983.11e-109B3 domain-containing protein Os06g0112300
SwissprotQ9LHY92e-22Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A445DHD61e-108A0A445DHD6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]