PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.59AEA
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 299aa    MW: 33507.4 Da    PI: 7.3049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.59AEAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l++ + ++G g+W++++ + g+ R +k+c++rw +yl
      Aradu.59AEA 15 KGLWSPEEDNKLKNHIVKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding49.88e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e ++ +++ lG++ W+ Ia+ ++ gRt++++k++w++yl
      Aradu.59AEA  68 RGLFSKQEEETILTLHQILGNK-WSQIAQNLP-GRTDNEIKNYWHSYL 113
                      7889******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-22964IPR009057Homeodomain-like
PROSITE profilePS5129416.9431062IPR017930Myb domain
SuperFamilySSF466893.45E-2812109IPR009057Homeodomain-like
SMARTSM007179.6E-121464IPR001005SANT/Myb domain
PfamPF002492.5E-131562IPR001005SANT/Myb domain
CDDcd001671.47E-101862No hitNo description
PROSITE profilePS5129424.8863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2565117IPR009057Homeodomain-like
SMARTSM007172.7E-1567115IPR001005SANT/Myb domain
PfamPF002491.6E-1468113IPR001005SANT/Myb domain
CDDcd001673.06E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGLQPLEKAK PKYKKGLWSP EEDNKLKNHI VKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGL FSKQEEETIL TLHQILGNKW SQIAQNLPGR TDNEIKNYWH SYLKKRVMSN  120
AKEMESHEQV QYATSSSETM DSSSHAVQNL ATQGTQNTYS FTNEACQSSP IPKLLFAEWL  180
TLDHVQCGGN SANSYDESLA LKDGFDSQIS SFQESATVHD AMSQGPFGGD YRNNSLARLA  240
HSSAEEMFNS QLKFGTTMVE NGFIQCIPGV DFSANFNMSN DTMYIYDNSI ISTAAQNGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231111723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.59AEA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941488.10.0transcription factor LAF1
RefseqXP_025620134.10.0transcription factor LAF1
SwissprotQ9M0K41e-60LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A445BFZ30.0A0A445BFZ3_ARAHY; Uncharacterized protein
STRINGGLYMA10G38110.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.16e-64myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]