PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5A3FQ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 441aa    MW: 50308.9 Da    PI: 7.9068
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5A3FQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.93.4e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.5A3FQ  51 KFYRNYAKVAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6****************98887..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1551137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.84259295IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4260292IPR007527Zinc finger, SWIM-type
SMARTSM005750.0036270297IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDHSTSDCQL NPGKVDYEFE SNEVPEPLSV VDDQFIPKVG MTFTTLEDAR KFYRNYAKVA  60
GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDLS  180
REQAERESDA ADFHTVIPCA TKSSIEAQFQ DVYTHQKFRE VQAQFRGKAN CITRLMNSAL  240
GYSVYEVGEQ VSSSIFNKFV VTYDSVAAEI KCQCLLFESR GILCHHALSV LSFEQSSHDE  300
PLMEPRSKRF DQLVFRSQNI CEFASESEEM TAFLHRAYDN VMAEMESLKA KRNHEDTNLE  360
SVNKFQSPPR IRTKGRTKNR LGSKLDKQIA NAAKKKKTKV LSEINLFDAA SVVYSNNRQY  420
QGHVMNYQFT VPAAVDNSLG V
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.5A3FQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-158protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
TrEMBLA0A445ESL40.0A0A445ESL4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.15e-11FAR1 family protein