PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5E40Q
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 213aa    MW: 24263.1 Da    PI: 6.7835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5E40QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.3e-061301691255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Aradu.5E40Q 130 RREKISERMKMLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 169
                  9*****************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.398118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-4129174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-12129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-7130173No hitNo description
Gene3DG3DSA:4.10.280.103.2E-12131176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MMAAFSSYQY HPNFLPLDST FFQNLNTTTT TSVPIPQSIL HHHQEEGFSD FNNNTISCVD  60
QISSCNKVSF ISNSDNEPSN VSVTTRNNLS PQSSMVVDKL EIGEQVTQKD GTTRKRMRKS  120
NNNNGGGVVR REKISERMKM LQRLVPGCDK VTGKALMLDE IINYVQSLQN QVEFLSLKLA  180
SENGSQFWDT EEQRQKFLHP YEFINNNNLC SFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.5E40Q
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311076e-65KT031107.1 Glycine max clone HN_CCL_82 bHLH transcription factor (Glyma06g17420.1) mRNA, partial cds.
GenBankKT0312516e-65KT031251.1 Glycine max clone HN_CCL_22 bHLH transcription factor (Glyma04g37690.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025616044.11e-106transcription factor bHLH137
TrEMBLA0A445C1V71e-106A0A445C1V7_ARAHY; Uncharacterized protein
STRINGXP_007137888.19e-47(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-27bHLH family protein