PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5U38R
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 222aa    MW: 25350.4 Da    PI: 5.1712
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5U38RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-1318101998
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +l+ g+l++pk+f  ++g   +++  + l+ ++g  W++    + ++g++++++GWkeF++   L+ g ++ F+++++   +  v +f+
  Aradu.5U38R  18 QSLEDGNLTIPKTFGMKYGDGVPNP--VYLKPPDGTAWKIDW--SEYDGAILFENGWKEFASYYSLDHGHMLWFEYNET--SNIEVNIFD 101
                  5667788***********5554565..***************..*******************************9764..445788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-184103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-184104IPR015300DNA-binding pseudobarrel domain
CDDcd100176.22E-910101No hitNo description
PROSITE profilePS5086311.77310103IPR003340B3 DNA binding domain
SMARTSM010191.8E-711103IPR003340B3 DNA binding domain
PfamPF023625.2E-1018101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MASSSFQVTC FYKIVLRQSL EDGNLTIPKT FGMKYGDGVP NPVYLKPPDG TAWKIDWSEY  60
DGAILFENGW KEFASYYSLD HGHMLWFEYN ETSNIEVNIF DMTCLEIDYP SLDHISDDDS  120
IEILNELPPR GNYPSKDHID DGNKVKVENE PPRRGRGRPR KTEKAAPKTP SPCTSKMFTS  180
SAKTKEVKWR AEIQYPSKHH IDEDNMAKVR DGFILASAPA EF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.5U38R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025607538.11e-156B3 domain-containing transcription factor VRN1-like
TrEMBLA0A445B0T21e-129A0A445B0T2_ARAHY; Uncharacterized protein
STRINGXP_007153416.13e-39(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.19e-19B3 family protein