PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5VY47
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 205aa    MW: 22609.7 Da    PI: 8.5679
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5VY47genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.52.6e-373487255
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55
                 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+
  Aradu.5VY47 34 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGQ 87
                 6899************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-252990IPR003851Zinc finger, Dof-type
PfamPF027016.1E-323687IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.2983892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEGIGPNNNS CTTRPHNEGG GGNNNNNLEK KARPQEQLNC PRCNSTNTKF CYYNNYSLTQ  60
PRYFCKTCRR YWTEGGSLRN VPVGGGQDLN LAFPSMDHHN NYHHALELLR SSMASRGLSN  120
PYYASSNSSL VPSNSSSVIY PTSGLGFPTM QEVVNNNKQN SGRVLFPFGE VMKSAEENNN  180
KEQGNNSSST ANGGYWNGMM GQGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.5VY47
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6629165e-50KP662916.1 Cajanus cajan Dof24 (Dof24) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937943.11e-114dof zinc finger protein DOF3.7 isoform X2
RefseqXP_025615995.11e-114dof zinc finger protein DOF3.7 isoform X2
SwissprotQ433857e-47DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A445C1S21e-107A0A445C1S2_ARAHY; Uncharacterized protein
STRINGGLYMA16G02550.23e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.33e-46Dof family protein