PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.60KCI
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 224aa    MW: 25612.7 Da    PI: 10.5858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.60KCIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.4e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W + Ed+ll  +v+q+G g W++++++ g++R++k+c++rw++yl
      Aradu.60KCI  9 KGAWAKVEDDLLRACVEQYGEGKWHLVPSRAGLNRCRKSCRLRWLNYL 56
                     799*******************************************97 PP
2Myb_DNA-binding47.73.6e-1562106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E +l ++ +++lG++ W++Ia +++ gRt++++k++w++y
      Aradu.60KCI  62 RGEFSEDEVDLMIRMHRLLGNR-WSLIAGRLP-GRTPNDVKNYWNTY 106
                      899*******************.*********.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.789460IPR017930Myb domain
SuperFamilySSF466891.31E-266103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-21659IPR009057Homeodomain-like
SMARTSM007171.8E-13858IPR001005SANT/Myb domain
PfamPF002492.4E-14956IPR001005SANT/Myb domain
CDDcd001674.77E-91156No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2260110IPR009057Homeodomain-like
SMARTSM007177.7E-1561109IPR001005SANT/Myb domain
PROSITE profilePS5129418.00761111IPR017930Myb domain
PfamPF002496.5E-1462106IPR001005SANT/Myb domain
CDDcd001672.25E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEGSIGLRKG AWAKVEDDLL RACVEQYGEG KWHLVPSRAG LNRCRKSCRL RWLNYLKPNI  60
KRGEFSEDEV DLMIRMHRLL GNRWSLIAGR LPGRTPNDVK NYWNTYVRRN NKHTSSSSSV  120
PSPSSVVTTV KRHDHINHQV IKPHPRTFSK ASPWLLLKKT STSGYHNNNK QRDGAKAEEE  180
TLLMLTTICL LMSMVKLGVI SFLISICGIH NNFVFLIANE LLHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2331091106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.60KCI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946081.11e-131transcription factor MYB90-like
RefseqXP_025624112.11e-131transcription factor MYB90 isoform X1
SwissprotQ9FNV96e-58MY113_ARATH; Transcription factor MYB113
TrEMBLA0A445B3581e-129A0A445B358_ARAHY; Uncharacterized protein
STRINGGLYMA09G36966.17e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]