PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.60VET
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 234aa    MW: 26415.2 Da    PI: 9.1353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.60VETgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.4e-20106195198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k l++s+v +  ++ lp  f+++h  +  +++t+tlede g+++++k+i +k++    l++GW++F   ++L+egD++vF+l++  +f  ++ ++r
  Aradu.60VET 106 FVKSLVRSHVASCFWMGLPVAFCKKHLAD--KDTTMTLEDEYGKEYKMKYIACKTG----LSAGWRQFSAVHKLQEGDVLVFQLVEPAKF--KIYIVR 195
                  89************************656..5679***************777776....***********************9875555..777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-2198197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-2499197IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-27104195No hitNo description
PROSITE profilePS5086313.507106197IPR003340B3 DNA binding domain
PfamPF023621.7E-17106195IPR003340B3 DNA binding domain
SMARTSM010195.0E-24106197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVDRMVKKEV EQHDEQTVTL GFYGDEQAQR RFSINMMDKQ NKATDNKNKV LNSDIKPVTN  60
GEAQKFASSM KATTAEATSS RGEAKSSAVI RAEEIRSSLQ GEYPSFVKSL VRSHVASCFW  120
MGLPVAFCKK HLADKDTTMT LEDEYGKEYK MKYIACKTGL SAGWRQFSAV HKLQEGDVLV  180
FQLVEPAKFK IYIVRADNLR EVDGALSLMN LDSYARQKQR GKPCFVSPCF GFLH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.60VET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029144684.11e-177B3 domain-containing protein At5g42700
TrEMBLA0A445ETL61e-160A0A445ETL6_ARAHY; Uncharacterized protein
STRINGGLYMA17G20175.15e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-37B3 family protein