PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.62DXS
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 244aa    MW: 26880.7 Da    PI: 8.8426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.62DXSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-183580147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+++G ++W++I+r++  gR++k+c++rw + 
      Aradu.62DXS 35 KGPWSAEEDRILTRLVERYGARNWSLISRYIK-GRSGKSCRLRWCNQ 80
                     79*****************************9.***********985 PP
2Myb_DNA-binding551.9e-1789131347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++  Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ 
      Aradu.62DXS  89 PFSSHEDDTIIAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 131
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.6813085IPR017930Myb domain
SuperFamilySSF466891.72E-3132128IPR009057Homeodomain-like
SMARTSM007171.6E-163483IPR001005SANT/Myb domain
PfamPF002491.8E-173580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-243688IPR009057Homeodomain-like
CDDcd001671.25E-153779No hitNo description
SMARTSM007171.1E-1486134IPR001005SANT/Myb domain
PROSITE profilePS5129419.49987136IPR017930Myb domain
CDDcd001671.29E-1189132No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2289135IPR009057Homeodomain-like
PfamPF002491.5E-1389131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEALNNRSSS CTASSSDSSS SESTQRNPNR PERIKGPWSA EEDRILTRLV ERYGARNWSL  60
ISRYIKGRSG KSCRLRWCNQ LSPTVEHRPF SSHEDDTIIA AHAQYGNRWA TIARLLPGRT  120
DNAVKNHWNS TLKRRARDQR RGGSATGVHA TCASLAAAPT NERASCSSGA LPPCTLPLED  180
DPLTALTLAP PGIDRGSGAM EAEQQRASPE TSVGSGFWDV MRDVIAREVR EYVSSNFSDH  240
SNFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-41311363108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.62DXS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086550.0KF208655.1 Arachis hypogaea putative R2R3 MYB protein 1 (MYB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015934294.11e-180transcription factor MYB44
SwissprotO231606e-55MYB73_ARATH; Transcription factor MYB73
SwissprotQ9SN125e-55MYB77_ARATH; Transcription factor MYB77
TrEMBLV5T6N41e-178V5T6N4_ARAHY; Putative R2R3 MYB protein 1
STRINGGLYMA06G04010.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-57myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]