PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.62I6K

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 510aa MW: 58359.1 Da PI: 8.8852

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.62I6K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.3	4.8e-08	102	146	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+e k +++ + Aradu.62I6K 102 KFYRNYAKAAGFSTRVQSTNRK--GNEIKNQLITCSREEKWKSKISP 146 6**************98887..8889********999888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-5	102	173	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	297	333	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	299	330	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	308	335	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
FARSSSREAS PGFFDRSFPL LSHSSSLCNS SFVFYLIFCF LKSKFELVLK IMEDSISDCQ 60 LNPGEVDYEF ESNEVPEPLS VVDDQFVPKV GMTFTTLEDA EKFYRNYAKA AGFSTRVQST 120 NRKGNEIKNQ LITCSREEKW KSKISPTEKT NPKPDVGAWI ISKVVLDHSH PCCPNHHFWA 180 GMRSTQRSES MHSFFNKFIT RNSSLIQFVK QYDNCLRSRE QAERESDAAD FHTVIPCATK 240 SSIEAQFQDV YTHQKFREVQ AQFRGKANCI TRLTNSALGY SVYEVGEQVS SSIFNKFVVT 300 YDSVAAEVKC QCLLFESRGI LCRHALSVLS FEQVSQVSPR YILERWSKKV KWRHTHIKSS 360 HDEPLMEPRS KRFDQLVFRS QNICEFASEL EELTVILHRA YDIVMAKMES LKAKRNGTSS 420 LSHEDANLES INELQSPPRI RTRGRPKNRL GSKLDKRIAN ATKKKKTKVL SEINLFDATS 480 VVHSNSSQYQ GHVMNYQFRV PAAGDNSLDV

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

FARSSSREAS PGFFDRSFPL LSHSSSLCNS SFVFYLIFCF LKSKFELVLK IMEDSISDCQ  60
LNPGEVDYEF ESNEVPEPLS VVDDQFVPKV GMTFTTLEDA EKFYRNYAKA AGFSTRVQST  120
NRKGNEIKNQ LITCSREEKW KSKISPTEKT NPKPDVGAWI ISKVVLDHSH PCCPNHHFWA  180
GMRSTQRSES MHSFFNKFIT RNSSLIQFVK QYDNCLRSRE QAERESDAAD FHTVIPCATK  240
SSIEAQFQDV YTHQKFREVQ AQFRGKANCI TRLTNSALGY SVYEVGEQVS SSIFNKFVVT  300
YDSVAAEVKC QCLLFESRGI LCRHALSVLS FEQVSQVSPR YILERWSKKV KWRHTHIKSS  360
HDEPLMEPRS KRFDQLVFRS QNICEFASEL EELTVILHRA YDIVMAKMES LKAKRNGTSS  420
LSHEDANLES INELQSPPRI RTRGRPKNRL GSKLDKRIAN ATKKKKTKVL SEINLFDATS  480
VVHSNSSQYQ GHVMNYQFRV PAAGDNSLDV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.62I6K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-29	far-red elongated hypocotyls 3