PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.64KRI

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 220aa MW: 24236.2 Da PI: 8.6345

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.64KRI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33	1.4e-10	81	122	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eE+ ++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qky Aradu.64KRI 81 EEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 122 7****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.247	75	127	IPR017930	Myb domain
SMART	SM00717	0.0015	75	125	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-8	81	122	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	5.6E-14	81	125	IPR006447	Myb domain, plants
CDD	cd00167	1.18E-6	81	123	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-7	81	121	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.8E-13	81	127	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGRKLFGVQL DISSSSCCVA MKKSFSMDSL PSSSSTTTTT SSFSSSRLPI DDNITLNNNN 60 SSAFGYLSDG LIVPPQDRKK EEEHRTFLVG LEKLGKGDWR GISRNYVTTR TPTQVASHAQ 120 KYFLRLATIN KKKRRSSLFD LVGIGNNNTK TEFHDAVGGI TNCKSGDSSV IVCNESKLEE 180 VVENNDIDHA TLSLLGRLTP FHQEIKSDND LKVRISPEVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	134	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.64KRI

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208672	0.0	KF208672.1 Arachis hypogaea putative MYB-related protein 18 (MYB18) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015966368.1	1e-132	uncharacterized protein LOC107490116
Swissprot	Q7XC57	4e-33	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A445D3T2	1e-121	A0A445D3T2_ARAHY; Uncharacterized protein
STRING	AES77144	4e-59	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3213	32	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	2e-36	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]