PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.66DGF
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24249.7 Da    PI: 10.1467
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.66DGFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.91.5e-241262151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ie +  rq tfskR+ gi+KKA+ELS+LCda+ a+i+fs++gkl++++s
  Aradu.66DGF 12 KKIEKNASRQATFSKRKRGIFKKAKELSTLCDADLALIVFSPSGKLFDFAS 62
                 689*********************************************986 PP
2K-box387e-1481172997
        K-box   9 leeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                   +++++ + q e +    + ++L      +Rhl Ge+L+ L++ eLq+Le+ Lek+l ++ + K++  l+ i e++k+  ++ ++n++L+k+
  Aradu.66DGF  81 SQDQQSHEFQLEKDTYYLKCKELTdktIGLRHLNGEELQGLKIHELQKLERVLEKGLARVSKEKDQRNLKDIIEMKKRGLQMVQDNHRLKKM 172
                  455556666666666666666666544567**********************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-33463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.277464IPR002100Transcription factor, MADS-box
CDDcd002652.62E-33673No hitNo description
PRINTSPR004044.1E-23626IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-29690IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241360IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-232641IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-234162IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1087172IPR002487Transcription factor, K-box
PROSITE profilePS512978.97789179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTKMSKQKME IKKIEKNASR QATFSKRKRG IFKKAKELST LCDADLALIV FSPSGKLFDF  60
ASSSVQEVTE RYHMQTSIYR SQDQQSHEFQ LEKDTYYLKC KELTDKTIGL RHLNGEELQG  120
LKIHELQKLE RVLEKGLARV SKEKDQRNLK DIIEMKKRGL QMVQDNHRLK KMRSQANSQG  180
QSSKSNSVEE SDNRDHDAPN LNLGLPMFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-16472169MEF2 CHIMERA
6byy_B4e-16472169MEF2 CHIMERA
6byy_C4e-16472169MEF2 CHIMERA
6byy_D4e-16472169MEF2 CHIMERA
6bz1_A4e-16472169MEF2 CHIMERA
6bz1_B4e-16472169MEF2 CHIMERA
6bz1_C4e-16472169MEF2 CHIMERA
6bz1_D4e-16472169MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.66DGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943294.11e-150MADS-box protein SVP-like isoform X2
RefseqXP_020988231.11e-150MADS-box protein SVP-like isoform X2
RefseqXP_025625822.11e-150MADS-box protein SVP
TrEMBLA0A445BAP61e-149A0A445BAP6_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-54MIKC_MADS family protein