PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.6A8PR

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 502aa MW: 57442.1 Da PI: 9.4079

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.6A8PR	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.5	9.2e-18	59	145	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.6A8PR 59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-15	59	145	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.198	304	340	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-4	313	337	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	315	342	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MDHSTSDCQL NPSEVDYEFE SNEVPEVYYI RHDWPLSVVD DELVPKVRMT FTTLEDAGKF 60 YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY 120 IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNDE ADRHIWVPIY 180 LDHHFWVGMR STQRSESMHS FFNKYITRNS SLIQFVKQYD NCLGSREQAK RESDAADFHT 240 VIPCATKSSI EAQFQDAYTH AKYREVQAQF RGKANCITRL KNSALGYSIY EVGEQVSSSI 300 FNKFAVTYDS VAAEVKCQCL LFESRGILCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR 360 QTHIKSSHDE PLMEPKSKRF DQLELTAILH RAYDNAMAEM EALKARKKGT SSLSHEDANL 420 ESVNELQSPP RIRTRGRPKN RLGSKLEKQI ANATKKKKTK VLSEINLFDA ASAAHSNCSR 480 YQGHVINYQF RVPVAGDNSL GV

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MDHSTSDCQL NPSEVDYEFE SNEVPEVYYI RHDWPLSVVD DELVPKVRMT FTTLEDAGKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNDE ADRHIWVPIY  180
LDHHFWVGMR STQRSESMHS FFNKYITRNS SLIQFVKQYD NCLGSREQAK RESDAADFHT  240
VIPCATKSSI EAQFQDAYTH AKYREVQAQF RGKANCITRL KNSALGYSIY EVGEQVSSSI  300
FNKFAVTYDS VAAEVKCQCL LFESRGILCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR  360
QTHIKSSHDE PLMEPKSKRF DQLELTAILH RAYDNAMAEM EALKARKKGT SSLSHEDANL  420
ESVNELQSPP RIRTRGRPKN RLGSKLEKQI ANATKKKKTK VLSEINLFDA ASAAHSNCSR  480
YQGHVINYQF RVPVAGDNSL GV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.6A8PR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444X817	0.0	A0A444X817_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-29	far-red elongated hypocotyls 3