PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.6M0XS

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 273aa MW: 31300.9 Da PI: 10.1168

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.6M0XS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40	1.3e-12	11	89	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY++YAk vGFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+ + +C a++ ++ ++++l+H+H+++p Aradu.6M0XS 11 KFYRSYAKAVGFSTRVRCTNRK--ANEIKNQLITCSREGKWKSKISP---TEKTNLTAGLNCPARIYIHTL-------KDVVLDHSHPCCP 89 6*************988776..7779*********998877...89999***********987.......7889999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-10	11	89	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.137	168	204	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.0E-5	170	201	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	179	206	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MTFTTLEDAG KFYRSYAKAV GFSTRVRCTN RKANEIKNQL ITCSREGKWK SKISPTEKTN 60 LTAGLNCPAR IYIHTLKDVV LDHSHPCCPS KTKMLKQHRE LSMSIRRTIE NNEEAAQFQD 120 AYTHAKFREV QAQFKGKANC ITRLKNSALG YSIYEVREQV SSSIFNKFVV TYDSVAAKVK 180 CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK VKRRHTHIKS SHDETLMEPR 240 SKRFDQLIFR SQNICEFASE LGGADCNSAP SVR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.6M0XS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-179	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020993575.1	8e-96	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445E9M1	1e-175	A0A445E9M1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-16	far-red elongated hypocotyls 3