PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6Q8TN
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 506aa    MW: 57514.3 Da    PI: 9.5125
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6Q8TNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.31e-1744130191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.6Q8TN  44 KFYRDYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 130
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-1544130IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198293329IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-4302326IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4304331IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVYSAVCVFT VFGFKGHSVP LSVVDDELVP KVGMTFRTLE DAGKFYRDYA KAAGFSTRVR  60
CTNRKGNEIK NQLITCSREG KWKSKISPTE KTNPTAGLNC PARIYIHTLK DVGAWIISKV  120
VLDHSHPCCP SKAEMLKQHR ELSMSIRRTI ENNDEADLYE DRHIWVPVYL DHHFWAGMRS  180
TQRSESMHSF FNKYITRNSS LIQFVKQYDN FLGSREQAER ESDAADFHTV IPCATKSPIE  240
TQFQDAYTQA KFREVQAQFR GKANCITRLK NSALGYSVYE VGEQVSSSIL DKFAVTYDSV  300
AAEVKCQCLL FESRGILCRH ALSVLSFEQV SQVSPRYILE RWSKKVKRRH THIKSSHDEP  360
LIEPRSKRFD QLVFRSQNIC EFASESEELT AILHRAYDNV MAEMEAVKAK RKGTSSLSHE  420
DANLESVNEL QSPPRIRTRG RPKNRLGSKL EKQIANATKK KKTKVLSEIN LFDAASAVHS  480
SSSQYQGQVI NYQFRVPAAG DNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6Q8TN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-37far-red elongated hypocotyls 3