PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6RE94
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 422aa    MW: 46310.4 Da    PI: 7.2921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6RE94genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.3e-104873126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C +f+rtG C yG +C+++H+
  Aradu.6RE94 48 PGEPDCLYFLRTGMCGYGTNCRYNHP 73
                 5789*********************8 PP
2zf-CCCH38.12.6e-1291116227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C +f++tGtCkyG++Ck++H++
  Aradu.6RE94  91 GQPDCEYFLKTGTCKYGSSCKYHHPR 116
                  5799********************96 PP
3zf-CCCH38.22.5e-12139161527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C++++rtG Ck+G  CkF+H+p
  Aradu.6RE94 139 SCPYYMRTGSCKFGVACKFHHPP 161
                  6********************97 PP
4zf-CCCH41.81.7e-13268293227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+++ tGtCkyG+ CkF+H++
  Aradu.6RE94 268 DQPECRYYMNTGTCKYGSDCKFHHPK 293
                  689*********************96 PP
5zf-CCCH35.91.3e-11310335126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C++++ +G+CkyG++CkF H+
  Aradu.6RE94 310 PGQAICSYYRIYGICKYGPTCKFDHP 335
                  5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5914775IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-54774IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-64973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-55274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-45373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.12689117IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-789116IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-1091116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-694118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901134162IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4139160IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6266293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.605266294IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11268293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-7270295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-6272293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5307335IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582309337IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4314334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPENRQVLRN AASNQSGDNI EEAIRRLKIN DNRDRDTAGQ TSPYPDRPGE PDCLYFLRTG  60
MCGYGTNCRY NHPANVSLGT HYGEELPERN GQPDCEYFLK TGTCKYGSSC KYHHPRDRRG  120
AAPVSFNALG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP PHATFGASGV AASPTSMIPA  180
SGYVGGYPYS LPRMPYLSGQ GLQSYVPPFF SSPQGIIPGQ GWNSYMGSMN PAMSTGFLGS  240
NLVYDSVNPG ESLSGGQVVS LNLPDRPDQP ECRYYMNTGT CKYGSDCKFH HPKERIAQSF  300
INPLGLPVRP GQAICSYYRI YGICKYGPTC KFDHPVLAIS QNYRLATPTA LSALDTPLDG  360
NRRGTFQPPE TSPSKLSSDE HQHSDNNINN SQAAEDSSKQ ADHTTSNSFE VASESSLHDQ  420
DA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6RE94
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973683.10.0zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_025609024.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A445C4N00.0A0A445C4N0_ARAHY; Uncharacterized protein
STRINGXP_007141660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-115C3H family protein