PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.6S06R

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HD-ZIP

Protein Properties

Length: 251aa MW: 28674.7 Da PI: 6.6366

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.6S06R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	32	85	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA++lgL+ rq+ +WFqNrRa++k Aradu.6S06R 32 KKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWK 85 456899***********************************************9 PP
2	HD-ZIP_I/II	129.9	1e-41	31	121	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+k kqlE+dy++Lkr+++a+k++n++L++++++L++++ Aradu.6S06R 31 EKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKIKQLERDYDQLKRQFEAVKSDNDALHAQNQKLQAQI 121 69**************************************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.18E-19	22	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	27	87	IPR001356	Homeobox domain
SMART	SM00389	1.6E-18	30	91	IPR001356	Homeobox domain
Pfam	PF00046	7.4E-16	32	85	IPR001356	Homeobox domain
CDD	cd00086	9.66E-16	32	88	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.0E-19	39	85	IPR009057	Homeodomain-like
PRINTS	PR00031	5.2E-6	58	67	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	62	85	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.2E-6	67	83	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-15	87	127	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSFSGIDLGG VEEGNNNGDE ELSDDGSQIG EKKRRLNMEQ VKALEKSFEL GNKLEPERKM 60 QLARSLGLQP RQIAIWFQNR RARWKIKQLE RDYDQLKRQF EAVKSDNDAL HAQNQKLQAQ 120 ILALKNREAT TESINLNKDT EGSCSNRSEN SSEIKFDIST RTPTTTTTTT TTIVDSPLSS 180 KPFFPSSSSS TRPPHQLFQV SRPEIHLHQC HQQNNNNNNH VVAKEESLSS MFVAMDDQSG 240 FWPWLEQQHF N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	87	RRARWKIKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.6S06R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015965467.1	0.0	homeobox-leucine zipper protein ATHB-13 isoform X2
Swissprot	Q8LC03	4e-95	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A444Z5I1	1e-131	A0A444Z5I1_ARAHY; Uncharacterized protein
STRING	evm.model.supercontig_183.29	1e-112	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1271	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	7e-81	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]