PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.6X543

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 189aa MW: 20998.7 Da PI: 8.8465

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.6X543	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	9.7e-45	33	131	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++ Aradu.6X543 33 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATN 130 7*********************************************************************************************9987 PP DUF260 99 e 99 + Aradu.6X543 131 A 131 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.881	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-44	33	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
KNIDLERAST TRAKKKRKSS SSIMASSSYS NSPCAACKFL RRKCMPDCIF APYFPPEEPQ 60 KFANVHKIFG ASNVSKLLNE VQPHQREDAV NSLAYEAEAR IKDPVYGCVG AISVLQRQVI 120 RLQKELDATN ADLIRYTCNE MTTLHDGRRI GEASSTFSQS PSAYYYPSPW NNDPCAGDAG 180 FHRGGGNHM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-68	30	141	8	119	LOB family transfactor Ramosa2.1
5ly0_B	8e-68	30	141	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.6X543

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015971507.1	1e-125	LOB domain-containing protein 25-like
Refseq	XP_025607376.1	1e-125	LOB domain-containing protein 25
Swissprot	Q8L8Q3	9e-70	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A445CUM1	1e-123	A0A445CUM1_ARAHY; Uncharacterized protein
STRING	XP_007140818.1	1e-100	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	5e-68	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]