PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.7244H

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 181aa MW: 20135.7 Da PI: 5.1967

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.7244H	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.7	9.8e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+k+C++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA ar+rdPvyG+vg i+ lq+q+ ql+ +la+++ Aradu.7244H 6 PCASCKLLRRRCTKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPIDQRGDAVSSLVYEATARVRDPVYGCVGAISYLQNQVTQLQMQLAVAQ 103 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Aradu.7244H 104 AE 105 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.568	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGGSSPCASC KLLRRRCTKE CIFAPYFPSD DPRKFAIVHK VFGASNVSKM LQELPIDQRG 60 DAVSSLVYEA TARVRDPVYG CVGAISYLQN QVTQLQMQLA VAQAEILSIH QMQQDPSNNN 120 TTLLPSQLLD QDYSEKFLLL SSAENNNNYD FLPQYLSFAS SSSSSSNVFQ DSEPLKRESF 180 C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-48	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-48	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.7244H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	3e-48	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015950199.1	1e-132	LOB domain-containing protein 12-like
Refseq	XP_025626482.1	1e-132	LOB domain-containing protein 12
Refseq	XP_025691975.1	1e-132	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-69	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A445EVT3	1e-130	A0A445EVT3_ARAHY; Uncharacterized protein
STRING	GLYMA11G29450.1	1e-87	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-71	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]