PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.730ZQ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 496aa MW: 56562.2 Da PI: 8.84

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.730ZQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.3	1.1e-17	61	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++k+ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.730ZQ 61 KFYRNYAKAAGFSTRVRCTNKK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHSCCP 147 6*************998877..8889*********998877...8999**********998879************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-15	61	147	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.087	288	324	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	295	321	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	299	326	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MDHSTSDCQL YPGEVDYEFE SNEVPEPVFL QFMPLKPLSV VDDELVPKVG MTFTTLEDAE 60 KFYRNYAKAA GFSTRVRCTN KKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR 120 IYIHTLKDVG AWIISKVVLD HSHSCCPSKA EMLKQHRELS MSIRRTIENN KEADLYEDRH 180 IWVPIYLDHH FWAGMRSTQR SESMHSFFNK EQAERESDAA DFHTVIPCAT KFSIEAQFQD 240 AYTHAKFREV QAQLRGKANC ITRLKNSALG YSVYEVGEQV SSSIFNKFAV TYDSVAVEVK 300 CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK VKRRQTHIKS SHDEPLMEPR 360 SKRFDQLVFR SQNICEFASE SEELTAILHR AYDNAMAEME ALKAKRKGTS SLSHEDANLE 420 SVNELQSPPR IRTRGRPKNR LGSKLEKQIA NATKKKKTKV LSEINLFDAA SAAHSNSSQY 480 QGHVINYQFR VPAAGG

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MDHSTSDCQL YPGEVDYEFE SNEVPEPVFL QFMPLKPLSV VDDELVPKVG MTFTTLEDAE  60
KFYRNYAKAA GFSTRVRCTN KKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHSCCPSKA EMLKQHRELS MSIRRTIENN KEADLYEDRH  180
IWVPIYLDHH FWAGMRSTQR SESMHSFFNK EQAERESDAA DFHTVIPCAT KFSIEAQFQD  240
AYTHAKFREV QAQLRGKANC ITRLKNSALG YSVYEVGEQV SSSIFNKFAV TYDSVAVEVK  300
CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK VKRRQTHIKS SHDEPLMEPR  360
SKRFDQLVFR SQNICEFASE SEELTAILHR AYDNAMAEME ALKAKRKGTS SLSHEDANLE  420
SVNELQSPPR IRTRGRPKNR LGSKLEKQIA NATKKKKTKV LSEINLFDAA SAAHSNSSQY  480
QGHVINYQFR VPAAGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.730ZQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	7e-25	far-red elongated hypocotyls 3