PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.75FRQ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 457aa MW: 51413.8 Da PI: 8.2322

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.75FRQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aradu.75FRQ 98 FVCEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP
2	zf-C2H2	10.7	0.0017	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Aradu.75FRQ 175 WKCDKCSKKYAVHSDWKAHAKIC 197 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.3E-7	97	120	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	97	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	7.1E-5	98	120	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	98	120	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	98	120	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	140	170	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.5E-4	163	196	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.3E-7	170	195	No hit	No description
SMART	SM00355	150	175	195	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MMSEEPFSSV LPPNTTITST LVHLQDPTSN PSSNNSKPNS NQPTKKRRNL PGTPGKYQLY 60 TKLTANSNLS VGYICFDSDP DAEVIAMSPK SLMATNRFVC EICNKGFQRD QNLQLHRRGH 120 NLPWKLKQRN KEEQVRKKVY VCPEKSCVHH DPCRALGDLT GIKKHYSRKH GEKKWKCDKC 180 SKKYAVHSDW KAHAKICGTR EYKCDCGTIF SRKDSFITHR AFCDALAEEG ARINSVPTTL 240 SNLMDQKLMM MRNNNIQIPL WLDQGNSNNN HNHVSGISSN TSSACTNGNT IIMPHHDVVN 300 NSMFGSQQWQ QNLEASSSSL TNNNNNANVA MMMPPPHAGL KQEQDEMFYF GASNYHHHHI 360 MLQKASQIGG GDELVNLEGS ISSIPPLILN PTRRPSKNDN KDEDDELGLT RDFLGVGEDE 420 STMSNTRPLM LQQHLADFTA MDMHHQTHYS SSSGHYC

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MMSEEPFSSV LPPNTTITST LVHLQDPTSN PSSNNSKPNS NQPTKKRRNL PGTPGKYQLY  60
TKLTANSNLS VGYICFDSDP DAEVIAMSPK SLMATNRFVC EICNKGFQRD QNLQLHRRGH  120
NLPWKLKQRN KEEQVRKKVY VCPEKSCVHH DPCRALGDLT GIKKHYSRKH GEKKWKCDKC  180
SKKYAVHSDW KAHAKICGTR EYKCDCGTIF SRKDSFITHR AFCDALAEEG ARINSVPTTL  240
SNLMDQKLMM MRNNNIQIPL WLDQGNSNNN HNHVSGISSN TSSACTNGNT IIMPHHDVVN  300
NSMFGSQQWQ QNLEASSSSL TNNNNNANVA MMMPPPHAGL KQEQDEMFYF GASNYHHHHI  360
MLQKASQIGG GDELVNLEGS ISSIPPLILN PTRRPSKNDN KDEDDELGLT RDFLGVGEDE  420
STMSNTRPLM LQQHLADFTA MDMHHQTHYS SSSGHYC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-37	171	236	3	68	Zinc finger protein JACKDAW
5b3h_F	5e-37	171	236	3	68	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	137	KQRNKEEQVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.75FRQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015952372.2	0.0	protein indeterminate-domain 9
Swissprot	Q944L3	1e-104	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	A0A445E4H3	0.0	A0A445E4H3_ARAHY; Uncharacterized protein
STRING	GLYMA12G07510.2	1e-124	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-93	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]