PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.7E0N8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 145aa    MW: 15703.2 Da    PI: 9.9194
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.7E0N8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-06527225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C+ffar + C  Gd C+F H
  Aradu.7E0N8  5 KSKPCSFFAR-HSCMKGDDCPFDH 27
                 6789******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.591330IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5528IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPSTKSKPCS FFARHSCMKG DDCPFDHQLS KYPCVNFVPG GCALCVSFEE NFPKGSSHQP  60
RKILLANTVQ KQLKLASKGV SFVDVAKLSL PSPTTPKEGT TKVGLSSFDQ STSGTNQTLV  120
EIPKKLPARI PKGINFLAFG KDHFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.7E0N8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025676059.12e-54zinc finger CCCH domain-containing protein 65 isoform X2
TrEMBLA0A444XFR67e-53A0A444XFR6_ARAHY; Uncharacterized protein
TrEMBLA0A444XFU48e-53A0A444XFU4_ARAHY; Uncharacterized protein
STRINGGLYMA14G39391.12e-27(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323