PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.7Q1J6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 358aa    MW: 40140.4 Da    PI: 7.1632
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.7Q1J6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.3e-093454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C f+++ G C yG+rC++ H+
  Aradu.7Q1J6 34 ICTFYQK-GVCAYGSRCRYDHV 54
                 6******.*************7 PP
2zf-CCCH18.53.5e-06140161426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C+ fa+ G C++G++C+ +Hg
  Aradu.7Q1J6 140 PICS-FAAAGNCPRGETCPHIHG 161
                  5788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.493128IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0142956IPR000571Zinc finger, CCCH-type
SMARTSM003560.0083155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53253IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.436136163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0044137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.2E-10198264IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.14E-9200271No hitNo description
CDDcd001628.49E-4204264No hitNo description
PfamPF000972.6E-7205262IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.2E-7205262IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.386205263IPR001841Zinc finger, RING-type
PROSITE patternPS005180229238IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.225292321IPR000571Zinc finger, CCCH-type
SMARTSM003560.07292320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSRRVLCKFF AHGACLKGEH CEYSHDWNDP PNLICTFYQK GVCAYGSRCR YDHVKVSRPQ  60
SSTASSSITE QRPLVSDDVV FGNTGITSNG IAAAPEFSPS RSPSFIPSIP AWNQEQQQYH  120
EFVGDDDVSQ SRITSPAEIP ICSFAAAGNC PRGETCPHIH GDLCSTCGKH CLHPFRPEER  180
AEHMKSCENK QKHLEALKRS QEIECSVCLE RVLSKPTAAE RKFGLLSECD HPFCISCIRN  240
WRSSNPTLGM DVNSTLRACP ICRKLSYFVI PSVIWYSTHE EKMEIVDSYK AKLKSIDCKH  300
FDFGDGNCPF GTSCFYKHAY RDGRLEEVVL RHLGAADGDT VIAKDIRLSD FLASMHLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.7Q1J6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936782.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-172C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A445BZK60.0A0A445BZK6_ARAHY; Uncharacterized protein
STRINGXP_004513288.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-162C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]