PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.7SJ8W

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 232aa MW: 26757.7 Da PI: 5.3847

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.7SJ8W	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.7e-07	65	89	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtG+C yG+r +F+H+ Aradu.7SJ8W 65 GEAYCIYYLRTGFCGYGSRYRFNHS 89 7889***************999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.441	63	91	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	65	89	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MRLECNFRDY IEAYLDEIQQ QISSKESFLF SIPLALVSLC LWNGAVRAIQ RGLGAAEEFY 60 PQRPGEAYCI YYLRTGFCGY GSRYRFNHSC DRADIWFHCV RPMDQYGRLS EGFRSDPASV 120 EWSNDSVICE CFRLLVLLLG LEDKSSWSQL ASLYARMCSV VYLIQIPKQL SLTLLTWLTN 180 SDPRSQPLRF LCPGTKLLSD VFLSLSFDED LGMSKKKDER EGVTINSWID RV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.7SJ8W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-11	C3H family protein