PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.7UE4L

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 394aa MW: 45058.9 Da PI: 8.8224

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.7UE4L	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.2e-18	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.7UE4L 51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-15	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.976	320	356	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.3E-4	329	352	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.005	331	358	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MDPSSSDSAL NPGDVDYEFE SNEVPEPLSV VDDELVPKVG MTFRTLEDAG KFYRNYAKAA 60 GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN DEAGIRPSKT YQSFVAAAGG 180 HRENLYEDRH IWVPIYLDHH FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG 240 SREQAERESD AADFHTVIPC ATKSSIETQF QDAYTQAKFR EVQAQFRGKA NCITRLKNSA 300 LGYSVYEVRE QVSSSIFNKF AVTYDSVAAE VKCQCLLFES RGILCRHALS MLSFEQVSQV 360 SPRYILERWS KKVKRRHTHI KSSHDEPLME PRSK

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MDPSSSDSAL NPGDVDYEFE SNEVPEPLSV VDDELVPKVG MTFRTLEDAG KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN DEAGIRPSKT YQSFVAAAGG  180
HRENLYEDRH IWVPIYLDHH FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG  240
SREQAERESD AADFHTVIPC ATKSSIETQF QDAYTQAKFR EVQAQFRGKA NCITRLKNSA  300
LGYSVYEVRE QVSSSIFNKF AVTYDSVAAE VKCQCLLFES RGILCRHALS MLSFEQVSQV  360
SPRYILERWS KKVKRRHTHI KSSHDEPLME PRSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.7UE4L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020981527.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445BX34	0.0	A0A445BX34_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-34	far-red elongated hypocotyls 3