PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.7V6T8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family DBB
Protein Properties Length: 216aa    MW: 23896.5 Da    PI: 5.9617
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.7V6T8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06443538
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                  C+ +++ e+++fC +++  lC+ C  ++H        Ht
  Aradu.7V6T8  4 QCDVCHKVEASFFCPSDEGALCHGCDRTIHCAnkvatkHT 43
                 7******99*********************6656676776 PP
2zf-B_box32.12.3e-105595337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                 ++ C+ ++e ++ +fC++++  lC +C +++H g       H
  Aradu.7V6T8 55 APLCDICQERRAYIFCQEDRAILCSECDVSIH-GaneytkkH 95
                 789*****************************.445666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.485147IPR000315B-box-type zinc finger
CDDcd000218.52E-5347No hitNo description
SMARTSM003360.0017447IPR000315B-box-type zinc finger
SMARTSM003361.2E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.55253100IPR000315B-box-type zinc finger
PfamPF006433.4E-85596IPR000315B-box-type zinc finger
CDDcd000211.74E-856100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKIQCDVCHK VEASFFCPSD EGALCHGCDR TIHCANKVAT KHTRFSLHHP NSKDAPLCDI  60
CQERRAYIFC QEDRAILCSE CDVSIHGANE YTKKHNRFLL TGVKLGAASS SSSSEPTSMS  120
SSRATTSSEA ANNQNNNNYY MGSDTGSVST SSISEYLIET IPGYCMEDLL DASFPPNGFC  180
KEYEQQSLFQ DRNNVHHYVS MCSFPLEAWS PSSTPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.7V6T8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952566.11e-162B-box zinc finger protein 20 isoform X1
RefseqXP_025686711.11e-162B-box zinc finger protein 20 isoform X1
SwissprotQ9LQZ71e-57BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A445A8L31e-160A0A445A8L3_ARAHY; Uncharacterized protein
STRINGGLYMA11G12060.11e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.16e-51DBB family protein
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]