PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.809HD

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 266aa MW: 28215.3 Da PI: 8.7734

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.809HD	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	22	81	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk Aradu.809HD 22 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKI 81 6899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	17	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEGISGNSSC TARPVLEKKA RPQEQLNCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW 60 TEGGSLRNVP VGGGSRKNKK IISSSASSSS SSLSSSSVPK VPDLNPPQNP NNKMMQGGGH 120 DLNLAFPAMD NFHHHALSAY VEIPKLETGG GGGGGDGSSS TAAAAAVAPS SLSAIELLRS 180 SGMAAPYVHS SLMPNSNALY PSGFPMQEIK PSLGFSLVDG GQVENNDNHN NGRLLFPFGV 240 DQNNKQQAGN NSTGYWTGII GEGSSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.809HD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015968347.1	0.0	dof zinc finger protein DOF2.5
Refseq	XP_015968348.1	0.0	dof zinc finger protein DOF2.5
Refseq	XP_020981820.1	0.0	dof zinc finger protein DOF2.5
Swissprot	Q9ZPY0	9e-60	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A444YLD7	1e-151	A0A444YLD7_ARAHY; Uncharacterized protein
STRING	GLYMA16G02550.2	1e-98	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-55	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]