PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.84KC0
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 460aa    MW: 49741.2 Da    PI: 5.8442
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.84KC0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.44.4e-19119205186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +L++a++e+ ++l+rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk ++++ +++ + + s++p+f+++e
  Aradu.84KC0 119 EWSDTAIVCLLDAYTEKFTQLNRGNLRGRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRISSG-CITASHWPWFKHME 205
                  5*************************************666677899*************************9.89999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-20117207No hitNo description
Gene3DG3DSA:3.40.1160.104.4E-12256332IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536339.16E-42264453IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.101.2E-34338453IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006963.0E-15339433IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MASCDDDDDD FSLLHQPYAP PSHHHNYSTA VAAATTAVQP KPVSDTDAED YSNPFDEDNT  60
TTHANANTTE KRKDQDEIGN NNNSNDASYG FNKRSKLSAS ASGSASACSG AEYRKDREEW  120
SDTAIVCLLD AYTEKFTQLN RGNLRGRDWE EVAAVVSERC ENQSKSVEQC KNKVDNLKKR  180
YKLERHRISS GCITASHWPW FKHMENIVGN SLSAGKFPGG DEDKAIVAST AGNSPRQPKR  240
YGGASQSSGG QVNNMKSKAL SNLRWRRVIL KISGAALTGS DTCNIDPKVA MLISREVAIA  300
SRLGVEVAIV VGGRNFFCGD AWVAATGLER CTAYQVGHLE KGRVVIFGGI GFGTGNPLFS  360
TDIAAALRAS ELNAEAVLKG TNVDGVYDCN SRDNNFTFEH ISFRELVSRG VTPMDMTALT  420
FCEENGIPVV VFNILEPGNI SKALCGEQVG TLVDQTGAIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-402574531239Uridylate kinase
3ek5_B7e-402574531239Uridylate kinase
3ek5_C7e-402574531239Uridylate kinase
3ek5_D7e-402574531239Uridylate kinase
3ek5_E7e-402574531239Uridylate kinase
3ek5_F7e-402574531239Uridylate kinase
3ek6_A7e-402574531239Uridylate kinase
3ek6_B7e-402574531239Uridylate kinase
3ek6_C7e-402574531239Uridylate kinase
3ek6_D7e-402574531239Uridylate kinase
3ek6_E7e-402574531239Uridylate kinase
3ek6_F7e-402574531239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.84KC0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184790.10.0uncharacterized protein LOC107626423
TrEMBLA0A445E7530.0A0A445E753_ARAHY; Uncharacterized protein
STRINGXP_007145266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-162Trihelix family protein