PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.868Z1

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 359aa MW: 41168.9 Da PI: 9.3026

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.868Z1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.9	6e-12	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r ++++++ +ei+++ + s+e k +++ + +++ +++ +C a++ ++ k g w ++k++l+ +H+++p Aradu.868Z1 51 KFYRNYAKAAGFSTRFRSTNRK--GNEIKNQLITYSREEKWKSKISP---TEKMNPTADLNCLARIYIHTLKdVGAWIISKVVLDYSHSCCP 137 6*************998887..66677777777777777766555...8899999*******998879************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-9	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.741	149	182	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	157	184	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.8E-4	158	179	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPKPLSV VDDQFVPKVG MTFTTLEDAE KFYRNYAKAA 60 GFSTRFRSTN RKGNEIKNQL ITYSREEKWK SKISPTEKMN PTADLNCLAR IYIHTLKDVG 120 AWIISKVVLD YSHSCCPSKA EMLKQHRKLS MSIHPEVKCQ CLLFESRGIL CRHALSVLSF 180 EQVSQVSPRN ILERWSKKVK RRHTYIKSSH DEPLLEPRSK RFDELIFCLQ NVCEFASESE 240 ELTTILHRAY NTIMVEMEEL KAKRKGTSSL SHEDANLESV NELQSPPRIR TRGHPKNRLG 300 SKLDKQIKNA SKKKKTKALN ELNLFNAGSV VHSDSSQYQG RVMNYQFRVP AIADNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDDSTSDCQL NQGEVDYEFE SNEVPKPLSV VDDQFVPKVG MTFTTLEDAE KFYRNYAKAA  60
GFSTRFRSTN RKGNEIKNQL ITYSREEKWK SKISPTEKMN PTADLNCLAR IYIHTLKDVG  120
AWIISKVVLD YSHSCCPSKA EMLKQHRKLS MSIHPEVKCQ CLLFESRGIL CRHALSVLSF  180
EQVSQVSPRN ILERWSKKVK RRHTYIKSSH DEPLLEPRSK RFDELIFCLQ NVCEFASESE  240
ELTTILHRAY NTIMVEMEEL KAKRKGTSSL SHEDANLESV NELQSPPRIR TRGHPKNRLG  300
SKLDKQIKNA SKKKKTKALN ELNLFNAGSV VHSDSSQYQG RVMNYQFRVP AIADNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.868Z1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-118	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_020989760.1	1e-118	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444Y6C3	0.0	A0A444Y6C3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-11	far-red elongated hypocotyls 3