PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.87BWV
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 563aa    MW: 64469.6 Da    PI: 7.3236
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.87BWVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.92.6e-1693182189
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  kfY +YAk+vGF +++++++     k+ +  +++  +C+ eg+re++ ++   + r ++ t t C+ ++ v +++ ++ w+v++lel H+H++
  Aradu.87BWV  93 KFYANYAKKVGFVTKIRNTNFDktrKELKIPVNQSIYCTHEGYRESRVNA---ATRANKITATRCRTRMYVVLDNeNECWVVSRLELRHSHPC 182
                  6************9999988773323344457999***********9988...9999***************99999**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1393183IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.458350388IPR007527Zinc finger, SWIM-type
SMARTSM005750.0062363390IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAFSPTERGS ITTFTSPTQG DEQFNVDELD IQEQVGYKFD EITDFVVTRK DELDDGHQKE  60
HVLFLELSDH SGIGEEEILV IGMSFGSLPL TQKFYANYAK KVGFVTKIRN TNFDKTRKEL  120
KIPVNQSIYC THEGYRESRV NAATRANKIT ATRCRTRMYV VLDNENECWV VSRLELRHSH  180
PCSAEKAVHY HEYWELTMHA KCVITDNDEA GIRPNKTNVA EFSTSSDNLY VNQWKWVPIF  240
FKSEFWAGMR STHRSESMHA FYGEYLHCKS GLVQFVHEYD NVIGTKEQKE LEDAAADSKG  300
VIPCIGSTDI ERQFQPEYTS SVFRILQLEG DTISITVDEQ KVFWGKLVYH TFRVDFDPSS  360
RKGRCECNKF ESAGILCCHT IAVWSYYRVD IVPSCYVLPR WSKNVIRKHT YVKSSHDVAR  420
KFYNVAQEFV ACDEEAAILR AALWDVKSKL IDYRASMRST NAAVSQNTVP IQSTGGAIVH  480
DIQGPSRVKT KGRPKGKRLG AELDKSIKKS MQKRNRKSHL DEVDLPSDND NHGSLSKRFE  540
DSTMWNSSEG GGFMHLLNSF RHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.87BWV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025636048.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_025669891.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445BNX40.0A0A445BNX4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1363727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-20far-red elongated hypocotyls 3