PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.8HA7W
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 246aa    MW: 27934.6 Da    PI: 8.5978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.8HA7WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.2e-0785104120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  nL+ H+
  Aradu.8HA7W  85 FSCPVCSKTFNRYNNLQMHM 104
                  89*****************9 PP
2zf-C2H216.42.6e-05169191123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C +Cgk+F  k + ++H +++
  Aradu.8HA7W 169 YACRKCGKPFAVKGDWRTHEKNC 191
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-678107No hitNo description
Gene3DG3DSA:3.30.160.603.4E-685104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03185107IPR015880Zinc finger, C2H2-like
PfamPF138946.6E-485107No hitNo description
PROSITE profilePS5015710.76285112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-6153189No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5155189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035563169189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.559169189IPR007087Zinc finger, C2H2
SMARTSM00355220195218IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTDPHYSNLY ASSGSVSDNT SGIDDRQKKK KISSNTEEIV GEKDEVMSVV SEHQPLLLER  60
LNNNKTQFQY WIPTASQILI GPTQFSCPVC SKTFNRYNNL QMHMWGHGSQ YRKGPDSLKG  120
TQPTAMLRLP CFCCAPGCKH NIDHPRARPL KDFRTLQTHY KRKHGVKPYA CRKCGKPFAV  180
KGDWRTHEKN CGRIWYCLCG SDFKHKRSLK DHVKAFGHGH GAFGIDCMQE EDEAASEVEH  240
DGDCSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430DRQKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.8HA7W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936759.11e-178zinc finger protein WIP2
SwissprotQ9SVY11e-114ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A445BZN51e-177A0A445BZN5_ARAHY; Uncharacterized protein
STRINGXP_007133835.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]